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@uw-loci

UW-Madison LOCI

Laboratory for Optical and Computational Instrumentation: the UW-Madison research lab of Kevin Eliceiri

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  1. curvelets curvelets Public

    Curvelet-Transform based fibrillar collagen quantification (CurveAlign and CT-FIRE)

    MATLAB 28 19

  2. loci-scripts loci-scripts Public

    Scripts and macros for LOCI scientific problems

    Shell

  3. visbio-imagej visbio-imagej Public

    ImageJ plugins for 3D visualization using the VisAD toolkit

    Java 1

  4. misc-plugins misc-plugins Public

    Miscellaneous ImageJ plugins

    Java 2 1

  5. search-image-sc search-image-sc Public

    Image.sc search service

    Python

Repositories

Showing 10 of 159 repositories
  • qupath-catalog-qpsc Public

    QuPath extension catalog for QPSC microscope control system

    uw-loci/qupath-catalog-qpsc's past year of commit activity
    Python 0 0 0 0 Updated Oct 25, 2026
  • qupath-extension-qpsc Public

    Java based extension for QuPath allowing control of a microscope through MicroManager

    uw-loci/qupath-extension-qpsc's past year of commit activity
    Java 1 Apache-2.0 0 0 5 Updated Oct 25, 2026
  • microscope_command_server Public

    Socket-based command server for remote microscope control and QuPath integration

    uw-loci/microscope_command_server's past year of commit activity
    Python 0 MIT 1 0 0 Updated Oct 25, 2026
  • QPSC Public

    QuPath Scope Control - Annotation-driven targeted microscopy acquisition from within QuPath

    uw-loci/QPSC's past year of commit activity
    PowerShell 0 1 3 0 Updated Oct 25, 2026
  • qupath-extension-fiber-analysis Public

    QuPath extension for fiber straightness, TWOMBLI-derived morphometrics, and GLCM texture analysis on segmented collagen fibers (Java + Appose Python).

    uw-loci/qupath-extension-fiber-analysis's past year of commit activity
    Java 0 Apache-2.0 0 0 0 Updated Oct 25, 2026
  • website-tests Public

    Automated tests for LOCI websites

    uw-loci/website-tests's past year of commit activity
    Raku 0 Unlicense 1 0 0 Updated Oct 24, 2026
  • qupath-catalog-mikenelson Public

    QuPath extensions by Mike Nelson at LOCI

    uw-loci/qupath-catalog-mikenelson's past year of commit activity
    Python 3 0 0 0 Updated Oct 24, 2026
  • microscope_configurations Public

    YAML configuration templates for QPSC microscope systems

    uw-loci/microscope_configurations's past year of commit activity
    Python 0 1 0 0 Updated Oct 24, 2026
  • qupath-extension-image-export-toolkit Public

    QuIET - QuPath Image Export Toolkit: batch export images for publication or model training

    uw-loci/qupath-extension-image-export-toolkit's past year of commit activity
    Java 4 Apache-2.0 0 0 0 Updated Oct 24, 2026
  • qupath-extension-cell-analysis-tools Public

    Python-powered clustering and phenotyping for highly multiplexed imaging data in QuPath

    uw-loci/qupath-extension-cell-analysis-tools's past year of commit activity
    Java 9 Apache-2.0 1 4 0 Updated Oct 24, 2026
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