Repositories list

• biocutils

  Public
  Miscellaneous utilities for BiocPy, mostly to mimic base functionality in R.

  utilitiesr-python

  utilitiesr-python

  Python

  •

  MIT License

  •00 forks in BiocPy/biocutils•22 stars in BiocPy/biocutils•33 issues in BiocPy/biocutils•11 pull request in BiocPy/biocutils•Updated Nov 2, 2026Nov 2, 2026

• tiledbarray

  Public
  TileDB backed delayed arrays for Python

  tiledbdelayedarray

  tiledbdelayedarray

  Python

  •

  MIT License

  •00 forks in BiocPy/tiledbarray•11 star in BiocPy/tiledbarray•11 issue in BiocPy/tiledbarray•11 pull request in BiocPy/tiledbarray•Updated Nov 2, 2026Nov 2, 2026

• summarizedexperiment

  Public
  Container class for genomic experiments

  summarizedexperimentgenomics-data

  summarizedexperimentgenomics-data

  Python

  •

  MIT License

  •22 forks in BiocPy/summarizedexperiment•77 stars in BiocPy/summarizedexperiment•33 issues in BiocPy/summarizedexperiment•11 pull request in BiocPy/summarizedexperiment•Updated Nov 2, 2026Nov 2, 2026

• spatialfeatureexperiment

  Public
  spatial-transcriptomics

  spatial-transcriptomics

  Python

  •

  MIT License

  •00 forks in BiocPy/spatialfeatureexperiment•11 star in BiocPy/spatialfeatureexperiment•22 issues in BiocPy/spatialfeatureexperiment•11 pull request in BiocPy/spatialfeatureexperiment•Updated Nov 2, 2026Nov 2, 2026

• spatialexperiment

  Public
  Container for Spatial Experiments

  spatial-transcriptomics

  spatial-transcriptomics

  Python

  •

  MIT License

  •00 forks in BiocPy/spatialexperiment•33 stars in BiocPy/spatialexperiment•1414 issues in BiocPy/spatialexperiment•55 pull requests in BiocPy/spatialexperiment•Updated Nov 2, 2026Nov 2, 2026

• singlecellexperiment

  Public
  Container class for single-cell experiments

  single-cellsinglecellexperiment

  single-cellsinglecellexperiment

  Python

  •

  MIT License

  •22 forks in BiocPy/singlecellexperiment•99 stars in BiocPy/singlecellexperiment•00 issues in BiocPy/singlecellexperiment•11 pull request in BiocPy/singlecellexperiment•Updated Nov 2, 2026Nov 2, 2026

• rds2py

  Public
  Read and Write RDS files, in Python

  pythonr

  pythonr

  Python

  •

  MIT License

  •55 forks in BiocPy/rds2py•3030 stars in BiocPy/rds2py•11 issue in BiocPy/rds2py•22 pull requests in BiocPy/rds2py•Updated Nov 2, 2026Nov 2, 2026

• scrnaseq

  Public
  Collection of public single-cell RNA-seq datasets

  single-cell-rna-seq

  single-cell-rna-seq

  Python

  •

  MIT License

  •11 fork in BiocPy/scrnaseq•33 stars in BiocPy/scrnaseq•00 issues in BiocPy/scrnaseq•11 pull request in BiocPy/scrnaseq•Updated Nov 2, 2026Nov 2, 2026

• orgdb

  Public
  Access OrgDb Annotation objects

  genome-annotationgenomicrangesorgdb

  genome-annotationgenomicrangesorgdb

  Python

  •

  MIT License

  •00 forks in BiocPy/orgdb•11 star in BiocPy/orgdb•00 issues in BiocPy/orgdb•11 pull request in BiocPy/orgdb•Updated Nov 2, 2026Nov 2, 2026

• pybiocfilecache

  Public
  Python implementation of the BiocFileCache R package

  cache

  cache

  Python

  •

  MIT License

  •22 forks in BiocPy/pybiocfilecache•22 stars in BiocPy/pybiocfilecache•00 issues in BiocPy/pybiocfilecache•11 pull request in BiocPy/pybiocfilecache•Updated Nov 2, 2026Nov 2, 2026

• multiassayexperiment

  Public
  Container class to represent and manage multi-omics genomic experiments

  multiassayexperiment

  multiassayexperiment

  Python

  •

  MIT License

  •11 fork in BiocPy/multiassayexperiment•77 stars in BiocPy/multiassayexperiment•00 issues in BiocPy/multiassayexperiment•11 pull request in BiocPy/multiassayexperiment•Updated Nov 2, 2026Nov 2, 2026

• mopsy

  Public
  Matrix operations

  numpymatrixscipy

  numpymatrixscipy

  Python

  •

  MIT License

  •11 fork in BiocPy/mopsy•00 stars in BiocPy/mopsy•11 issue in BiocPy/mopsy•11 pull request in BiocPy/mopsy•Updated Nov 2, 2026Nov 2, 2026

• iranges

  Public
  IRanges in Python

  interval-arithmeticiranges

  interval-arithmeticiranges

  Python

  •

  MIT License

  •11 fork in BiocPy/iranges•33 stars in BiocPy/iranges•00 issues in BiocPy/iranges•66 pull requests in BiocPy/iranges•Updated Nov 2, 2026Nov 2, 2026

• expressionatlas

  Public
  Access datasets from EMBL-EBI Expression Atlas

  embl-ebiexpression-data

  embl-ebiexpression-data

  Python

  •

  MIT License

  •00 forks in BiocPy/expressionatlas•11 star in BiocPy/expressionatlas•00 issues in BiocPy/expressionatlas•11 pull request in BiocPy/expressionatlas•Updated Nov 2, 2026Nov 2, 2026

• hdf5array

  Public
  HDF5 File-backed arrays for Python

  hdf5delayedarray

  hdf5delayedarray

  Python

  •

  MIT License

  •00 forks in BiocPy/hdf5array•11 star in BiocPy/hdf5array•00 issues in BiocPy/hdf5array•11 pull request in BiocPy/hdf5array•Updated Nov 2, 2026Nov 2, 2026

• experimenthub

  Public
  Access ExperimentHub resources

  experimenthub

  experimenthub

  Python

  •

  MIT License

  •00 forks in BiocPy/experimenthub•00 stars in BiocPy/experimenthub•00 issues in BiocPy/experimenthub•11 pull request in BiocPy/experimenthub•Updated Nov 2, 2026Nov 2, 2026

• ensembldb

  Public
  Access EnsemblDb from AnnotationHub

  ensemblannotationhub

  ensemblannotationhub

  Python

  •

  MIT License

  •00 forks in BiocPy/ensembldb•11 star in BiocPy/ensembldb•00 issues in BiocPy/ensembldb•11 pull request in BiocPy/ensembldb•Updated Nov 2, 2026Nov 2, 2026

• txdb

  Public
  Access TxDB Annotation objects

  genome-annotationgenomicrangestxdb

  genome-annotationgenomicrangestxdb

  Python

  •

  MIT License

  •00 forks in BiocPy/txdb•22 stars in BiocPy/txdb•00 issues in BiocPy/txdb•44 pull requests in BiocPy/txdb•Updated Nov 2, 2026Nov 2, 2026

• biostrings

  Public
  string-manipulationgenomic-sequences

  string-manipulationgenomic-sequences

  Python

  •

  MIT License

  •00 forks in BiocPy/biostrings•22 stars in BiocPy/biostrings•00 issues in BiocPy/biostrings•11 pull request in BiocPy/biostrings•Updated Nov 2, 2026Nov 2, 2026

• compressed-lists

  Public
  Memory-efficient container for list-like objects

  memory-management

  memory-management

  Python

  •

  MIT License

  •00 forks in BiocPy/compressed-lists•00 stars in BiocPy/compressed-lists•00 issues in BiocPy/compressed-lists•11 pull request in BiocPy/compressed-lists•Updated Nov 2, 2026Nov 2, 2026

• biocborn

  Public
  bioc objects + seaborn

  Python

  •

  MIT License

  •00 forks in BiocPy/biocborn•22 stars in BiocPy/biocborn•00 issues in BiocPy/biocborn•11 pull request in BiocPy/biocborn•Updated Nov 2, 2026Nov 2, 2026

• biorat

  Public
  miscellaneous

  miscellaneous

  Python

  •

  MIT License

  •00 forks in BiocPy/biorat•11 star in BiocPy/biorat•00 issues in BiocPy/biorat•11 pull request in BiocPy/biorat•Updated Nov 2, 2026Nov 2, 2026

• genomicranges

  Public
  Container class to represent genomic locations and support genomic analysis

  genomicranges

  genomicranges

  Python

  •

  MIT License

  •66 forks in BiocPy/genomicranges•2828 stars in BiocPy/genomicranges•11 issue in BiocPy/genomicranges•11 pull request in BiocPy/genomicranges•Updated Nov 2, 2026Nov 2, 2026

• biocsetup

  Public
  Quickly setup new Python packages

  pythonscaffold-templatehatch+ 1

  pythonscaffold-templatehatchuv

  Python

  •

  MIT License

  •00 forks in BiocPy/biocsetup•33 stars in BiocPy/biocsetup•11 issue in BiocPy/biocsetup•22 pull requests in BiocPy/biocsetup•Updated Nov 2, 2026Nov 2, 2026

• biocframe

  Public
  Bioconductor-like data frames

  dataframe

  dataframe

  Python

  •

  MIT License

  •33 forks in BiocPy/biocframe•66 stars in BiocPy/biocframe•00 issues in BiocPy/biocframe•11 pull request in BiocPy/biocframe•Updated Nov 2, 2026Nov 2, 2026

• hatchit

  Public
  Scaffold new python packages

  pythonscaffoldhatch+ 1

  pythonscaffoldhatchuv

  Jinja

  •

  MIT License

  •00 forks in BiocPy/hatchit•00 stars in BiocPy/hatchit•00 issues in BiocPy/hatchit•55 pull requests in BiocPy/hatchit•Updated Oct 5, 2026Oct 5, 2026

• biocpy.github.io

  Public
  CSS

  •00 forks in BiocPy/biocpy.github.io•00 stars in BiocPy/biocpy.github.io•00 issues in BiocPy/biocpy.github.io•00 pull requests in BiocPy/biocpy.github.io•Updated Aug 26, 2026Aug 26, 2026

• packages

  Public
  Discover and explore the BiocPy ecosystem

  registryindexbiocpy

  registryindexbiocpy

  JavaScript

  •00 forks in BiocPy/packages•00 stars in BiocPy/packages•00 issues in BiocPy/packages•00 pull requests in BiocPy/packages•Updated Aug 21, 2026Aug 21, 2026

• .github

  Public
  00 forks in BiocPy/.github•00 stars in BiocPy/.github•00 issues in BiocPy/.github•00 pull requests in BiocPy/.github•Updated Aug 15, 2026Aug 15, 2026

• DelayedArray

  Public
  DelayedArrays, in Python

  delayedarray

  delayedarray

  Python

  •

  MIT License

  •00 forks in BiocPy/DelayedArray•22 stars in BiocPy/DelayedArray•22 issues in BiocPy/DelayedArray•00 pull requests in BiocPy/DelayedArray•Updated Dec 13, 2025Dec 13, 2025