All pull requests

Pull requests

• chore: bump DataFusion to 55.2.0 and bio-formats to its DF 55 branch

  #332·mwiewior opened Nov 12, 2026Contributor·

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  10

• chore(vep): local parity and performance gate for HG002 and ClinVar

  #331·mwiewior opened Nov 10, 2026Contributor·4 tasks done·

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• perf(vep): estimate grid work at coding exon positions

  #328·mwiewior opened Nov 7, 2026Contributor·

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  7

• perf(vep): avoid repeated VCF input setup in grid workers

  #327·mwiewior opened Nov 7, 2026Contributor·

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  7

• chore(deps): bump noodles-fasta from 0.49.0 to 0.68.0

  dependenciesrust
  #325·dependabot[bot] opened Nov 1, 2026Bot·

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• chore(deps): bump futures from 0.3.32 to 0.3.34

  dependenciesrust
  #324·dependabot[bot] opened Nov 1, 2026Bot·

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• chore(deps): bump parquet from 58.0.0 to 59.3.2

  dependenciesrust
  #323·dependabot[bot] opened Nov 1, 2026Bot·

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• chore(deps): bump noodles-core from 0.16.0 to 0.21.0

  dependenciesrust
  #322·dependabot[bot] opened Nov 1, 2026Bot·

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• chore(deps): bump actions/cache from 4 to 6

  dependenciesgithub_actions
  #321·dependabot[bot] opened Nov 1, 2026Bot·

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• chore(deps): bump memmap2 from 0.9.10 to 0.9.12

  dependenciesrust
  #320·dependabot[bot] opened Nov 1, 2026Bot·

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• chore(deps): bump actions/checkout from 4 to 7

  dependenciesgithub_actions
  #319·dependabot[bot] opened Nov 1, 2026Bot·

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• chore(deps): bump actions-rust-lang/setup-rust-toolchain from 1 to 2

  dependenciesgithub_actions
  #318·dependabot[bot] opened Nov 1, 2026Bot·

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• build(deps): bump fjall from 3.1.3 to 3.1.4

  dependenciesrust
  #158·dependabot[bot] opened May 1, 2026Bot·

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• build(deps): bump lz4_flex from 0.12.1 to 0.13.0

  dependenciesrust
  #157·dependabot[bot] opened May 1, 2026Bot·

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• chore(deps): bump tokio from 1.52.3 to 1.54.1 in the tokio group across 1 directory

  dependenciesrust
  #156·dependabot[bot] opened May 1, 2026Bot·

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• build(deps): bump softprops/action-gh-release from 1 to 3

  dependenciesgithub_actions
  #155·dependabot[bot] opened May 1, 2026Bot·

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• Add Apple GPU backend for count_overlaps

  #152·mwiewior opened Apr 27, 2026Contributor·

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• build(deps): bump arrow-ipc from 56.2.0 to 58.1.0

  dependenciesrust
  #77·dependabot[bot] opened Apr 2, 2026Bot·

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• feat: Openspec

  #42·mwiewior opened Mar 16, 2026Contributor·

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• perf: Optimize remaining non-join range operators

  #37·mwiewior opened Mar 13, 2026Contributor·3 of 4 tasks·

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• ranges: trim interval join build payload

  #35·mwiewior opened Mar 12, 2026Contributor·

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• ranges: restore safe join selection and residual interval filtering

  #34·mwiewior opened Mar 12, 2026Contributor·

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• Feature/optimize unnest groupby

  #31·psuszyns opened Mar 11, 2026Collaborator·

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  28

• fix: Update bio-formats rev to include noodles lzma-rust2 fix

  #26·mwiewior opened Feb 25, 2026Contributor·1 task done·

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• feat: Upgrade DataFusion from 50.3.0 to 52.1.0

  #25·mwiewior opened Feb 25, 2026Contributor·

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  2